Michael Yao

Computer Science & Mathematics · Harvey Mudd College

I work at the intersection of computational physics, machine-learning interpretability, and molecular machine learning. My research pairs theory and simulation with careful research software to make complex scientific and learned systems easier to measure, test, and understand.

Portrait of Michael Yao

Research & Experience

Machine Learning Engineering Intern

San Francisco, CA

May 2026 – Present

Alkera AI, Inc. (YC-S26)

Building reinforcement-learning infrastructure and evaluation systems for an LLM data agent.

Machine Learning Research Intern

Remote — Barcelona, Spain

Mar 2026 – Present

Ersilia Open Source Initiative

Developing Chem-ICL, an in-context learning pipeline for molecular-property prediction.

Student Researcher, Computational Physics & Machine Learning

Claremont, CA

Oct 2025 – Present

Zhuang Group — Harvey Mudd College

Statistical Physics of Deep Neural Networks

Using mean-field theory to study signal propagation, criticality, and trainable depth in random neural networks.

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Heatmaps of the neural-network fixed point and order-to-chaos boundary

Water × Unsupervised ML

Using unsupervised learning to identify latent structural populations in molecular-dynamics simulations of supercooled water.

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Mechanistic Interpretability Researcher (Supervisor: Cole Blodin, Amazon Web Services)

Remote

Jan 2026 – Present

Algoverse

Tracing how reinforcement learning reshapes language-model representations with aligned sparse autoencoders.

Selected Software

  • SPEQTRO

    An autonomous agent that combines NMR, IR, and mass-spectrometry models into ranked molecular structures with traceable evidence.

  • Chem-ICL

    An in-context TabPFN pipeline that combines Ersilia model representations for molecular-property prediction without task-specific training.

  • ms-pred × PyG

    A PyTorch Geometric port of ICEBERG’s MS/MS fragmentation pipeline across eight graph-neural-network families.

Education

B.S. — Joint Computer Science & Mathematics

Claremont, CA

Expected May 2028

Harvey Mudd College

Relevant coursework: Statistical Mechanics, Probability, Statistics, Differential Equations, Graph Theory

IB Diploma — 44/45

Shanghai, China

2022 – 2025

Shanghai Qibao Dwight High School

Awards:

  • UK Chemistry Olympiad: Round 1 Gold Medalist (2023, 2024), Silver Medalist (2022)
  • Canadian Chemistry Olympiad: Round 2 Gold Medalist (2024), Round 1 Gold Medalist (2022)
Line illustration of Michael sleeping on a couch among cats